Detailed information of SNP:
|
SNP ID:
sf0222205920(Gbrowse)
Chromosome: chr02 Position: 22205920 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 57.83% | 42.17% |
| All Indica | 784 | 90.31% | 9.69% |
| All Japonica | 495 | 3.64% | 96.36% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 369 | 91.60% | 8.40% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222205920 | C->T | INTERGENIC | None |