Detailed information of SNP:
|
SNP ID:
sf0222216121(Gbrowse)
Chromosome: chr02 Position: 22216121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 79.46% | 20.54% |
| All Indica | 797 | 91.09% | 8.91% |
| All Japonica | 497 | 62.78% | 37.22% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 373 | 88.20% | 11.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222216121 | C->T | INTERGENIC | None |