Detailed information of SNP:
|
SNP ID:
sf0222238882(Gbrowse)
Chromosome: chr02 Position: 22238882 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 93.29% | 6.71% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 482 | 83.40% | 16.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 86 | 37.21% | 62.79% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222238882 | C->T | INTERGENIC | None |