Detailed information of SNP:



SNP ID: sf0222238882(Gbrowse)

Chromosome: chr02

Position: 22238882
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1400 93.29% 6.71%
All Indica796 98.99% 1.01%
All Japonica482 83.40% 16.60%
Aus67 100.00% 0.00%
Indica I374 98.66% 1.34%
Indica II213 100.00% 0.00%
Indica Intermediate209 98.56% 1.44%
Temperate Japonica331 96.68% 3.32%
Tropical Japonica86 37.21% 62.79%
Japonica Intermediate65 76.92% 23.08%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 85.37% 14.63%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222238882 C->T INTERGENIC None