Detailed information of SNP:
|
SNP ID:
sf0222260897(Gbrowse)
Chromosome: chr02 Position: 22260897 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.68% | 19.32% |
| All Indica | 798 | 71.30% | 28.70% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 69.52% | 30.48% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222260897 | T->A | INTERGENIC | None |