Detailed information of SNP:
|
SNP ID:
sf0222266905(Gbrowse)
Chromosome: chr02 Position: 22266905 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1304 | 95.86% | 4.14% |
| All Indica | 690 | 93.19% | 6.81% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 317 | 92.74% | 7.26% |
| Indica II | 178 | 91.01% | 8.99% |
| Indica Intermediate | 195 | 95.90% | 4.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222266905 | A->G | INTERGENIC | None |