Detailed information of SNP:
|
SNP ID:
sf0222271008(Gbrowse)
Chromosome: chr02 Position: 22271008 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 62.82% | 37.18% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 420 | 7.86% | 92.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 263 | 7.60% | 92.40% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 63 | 4.76% | 95.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222271008 | C->T | INTERGENIC | None |