Detailed information of SNP:
|
SNP ID:
sf0222302749(Gbrowse)
Chromosome: chr02 Position: 22302749 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 76.29% | 23.71% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 496 | 51.61% | 48.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 334 | 68.56% | 31.44% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222302749 | C->T | INTERGENIC | None |