Detailed information of SNP:
|
SNP ID:
sf0222310368(Gbrowse)
Chromosome: chr02 Position: 22310368 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.59% | 34.41% |
| All Indica | 799 | 89.49% | 10.51% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 29.25% | 70.75% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222310368 | C->T | INTERGENIC | None |