Detailed information of SNP:
|
SNP ID:
sf0222331711(Gbrowse)
Chromosome: chr02 Position: 22331711 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 95.45% | 4.55% |
| All Indica | 788 | 95.81% | 4.19% |
| All Japonica | 455 | 93.85% | 6.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 92.88% | 7.12% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 318 | 95.60% | 4.40% |
| Tropical Japonica | 80 | 97.50% | 2.50% |
| Japonica Intermediate | 57 | 78.95% | 21.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222331711 | G->A | LOC_Os02g36974(LOC_Os02g36974.1) | UTR_3_PRIME |
| sf0222331711 | G->A | LOC_Os02g36974(LOC_Os02g36974.2) | UTR_3_PRIME |
| sf0222331711 | G->A | LOC_Os02g36974(LOC_Os02g36974.6) | UTR_3_PRIME |
| sf0222331711 | G->A | LOC_Os02g36974(LOC_Os02g36974.4) | UTR_3_PRIME |
| sf0222331711 | G->A | LOC_Os02g36974(LOC_Os02g36974.3) | UTR_3_PRIME |