Detailed information of SNP:
|
SNP ID:
sf0222335019(Gbrowse)
Chromosome: chr02 Position: 22335019 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 91.38% | 8.62% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 483 | 80.33% | 19.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 321 | 79.44% | 20.56% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222335019 | A->T | LOC_Os02g36990(LOC_Os02g36990.1) | INTRON |