Detailed information of SNP:
|
SNP ID:
sf0222339936(Gbrowse)
Chromosome: chr02 Position: 22339936 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 83.61% | 16.39% |
| All Indica | 702 | 71.37% | 28.63% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 321 | 63.55% | 36.45% |
| Indica II | 193 | 70.98% | 29.02% |
| Indica Intermediate | 188 | 85.11% | 14.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222339936 | G->T | INTERGENIC | None |