Detailed information of SNP:
|
SNP ID:
sf0222363298(Gbrowse)
Chromosome: chr02 Position: 22363298 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.95% | 42.05% |
| All Indica | 796 | 89.32% | 10.68% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222363298 | T->C | INTERGENIC | None |