Detailed information of SNP:
|
SNP ID:
sf0222384948(Gbrowse)
Chromosome: chr02 Position: 22384948 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.01% | 41.99% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222384948 | T->G | LOC_Os02g37060(LOC_Os02g37060.1) | UTR_3_PRIME |