Detailed information of SNP:
|
SNP ID:
sf0222387226(Gbrowse)
Chromosome: chr02 Position: 22387226 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 94.78% | 5.22% |
| All Indica | 786 | 99.75% | 0.25% |
| All Japonica | 415 | 84.34% | 15.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 202 | 100.00% | 0.00% |
| Temperate Japonica | 275 | 93.82% | 6.18% |
| Tropical Japonica | 83 | 50.60% | 49.40% |
| Japonica Intermediate | 57 | 87.72% | 12.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222387226 | G->A | INTERGENIC | None |