Detailed information of SNP:
|
SNP ID:
sf0222392440(Gbrowse)
Chromosome: chr02 Position: 22392440 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.98% | 10.02% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222392440 | C->T | INTERGENIC | None |