Detailed information of SNP:
|
SNP ID:
sf0222401074(Gbrowse)
Chromosome: chr02 Position: 22401074 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 79.21% | 20.79% |
| All Indica | 751 | 63.52% | 36.48% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 56.99% | 43.01% |
| Indica II | 186 | 69.89% | 30.11% |
| Indica Intermediate | 200 | 69.50% | 30.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222401074 | G->A | INTERGENIC | None |