Detailed information of SNP:
|
SNP ID:
sf0222433752(Gbrowse)
Chromosome: chr02 Position: 22433752 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.86% | 39.14% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 496 | 5.65% | 94.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222433752 | G->A | LOC_Os02g37120(LOC_Os02g37120.1) | INTRON |
| sf0222433752 | G->A | LOC_Os02g37120(LOC_Os02g37120.2) | INTRON |