Detailed information of SNP:
|
SNP ID:
sf0222471233(Gbrowse)
Chromosome: chr02 Position: 22471233 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.62% | 48.38% |
| All Indica | 799 | 79.10% | 20.90% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222471233 | G->T | INTERGENIC | None |