Detailed information of SNP:
|
SNP ID:
sf0222516857(Gbrowse)
Chromosome: chr02 Position: 22516857 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1194 | 88.69% | 11.31% |
| All Indica | 752 | 98.80% | 1.20% |
| All Japonica | 326 | 64.72% | 35.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 98.55% | 1.45% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 193 | 98.45% | 1.55% |
| Temperate Japonica | 209 | 49.76% | 50.24% |
| Tropical Japonica | 66 | 93.94% | 6.06% |
| Japonica Intermediate | 51 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 35 | 88.57% | 11.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222516857 | C->A | INTERGENIC | None |