Detailed information of SNP:
|
SNP ID:
sf0222517857(Gbrowse)
Chromosome: chr02 Position: 22517857 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 51.36% | 48.64% |
| All Indica | 782 | 80.56% | 19.44% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 368 | 78.53% | 21.47% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 204 | 77.45% | 22.55% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222517857 | T->C | INTERGENIC | None |