Detailed information of SNP:
|
SNP ID:
sf0222519907(Gbrowse)
Chromosome: chr02 Position: 22519907 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 54.07% | 45.93% |
| All Indica | 795 | 84.65% | 15.35% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222519907 | C->T | INTERGENIC | None |