Detailed information of SNP:
|
SNP ID:
sf0222527970(Gbrowse)
Chromosome: chr02 Position: 22527970 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 52.70% | 47.30% |
| All Indica | 772 | 86.66% | 13.34% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 368 | 83.97% | 16.03% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 196 | 81.63% | 18.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222527970 | G->A | INTERGENIC | None |