Detailed information of SNP:
|
SNP ID:
sf0222533008(Gbrowse)
Chromosome: chr02 Position: 22533008 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 91.76% | 8.24% |
| All Indica | 754 | 86.07% | 13.93% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 359 | 87.19% | 12.81% |
| Indica II | 200 | 85.50% | 14.50% |
| Indica Intermediate | 195 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222533008 | C->T | INTERGENIC | None |