Detailed information of SNP:
|
SNP ID:
sf0222540157(Gbrowse)
Chromosome: chr02 Position: 22540157 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.22% | 42.78% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222540157 | T->C | LOC_Os02g37280(LOC_Os02g37280.1) | INTRON |