Detailed information of SNP:
|
SNP ID:
sf0222540320(Gbrowse)
Chromosome: chr02 Position: 22540320 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 55.39% | 44.61% |
| All Indica | 790 | 86.08% | 13.92% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 83.06% | 16.94% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 207 | 83.57% | 16.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222540320 | C->G | INTERGENIC | None |