Detailed information of SNP:
|
SNP ID:
sf0222551120(Gbrowse)
Chromosome: chr02 Position: 22551120 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 52.07% | 47.93% |
| All Indica | 790 | 89.11% | 10.89% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 60 | 6.67% | 93.33% |
| Indica I | 370 | 86.76% | 13.24% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222551120 | G->A | LOC_Os02g37309(LOC_Os02g37309.1) | SNPs that introduce stop codons |