Detailed information of SNP:
|
SNP ID:
sf0222551279(Gbrowse)
Chromosome: chr02 Position: 22551279 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 52.46% | 47.54% |
| All Indica | 797 | 88.83% | 11.17% |
| All Japonica | 495 | 1.82% | 98.18% |
| Aus | 55 | 10.91% | 89.09% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222551279 | C->T | LOC_Os02g37309(LOC_Os02g37309.1) | Non-Synonymous SNP |