Detailed information of SNP:
|
SNP ID:
sf0222551497(Gbrowse)
Chromosome: chr02 Position: 22551497 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.12% | 44.88% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222551497 | C->T | LOC_Os02g37309(LOC_Os02g37309.1) | Non-Synonymous SNP |