Detailed information of SNP:
|
SNP ID:
sf0222551615(Gbrowse)
Chromosome: chr02 Position: 22551615 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 56.37% | 43.63% |
| All Indica | 794 | 90.05% | 9.95% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 371 | 87.33% | 12.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222551615 | G->A | LOC_Os02g37309(LOC_Os02g37309.1) | Non-Synonymous SNP |