Detailed information of SNP:
|
SNP ID:
sf0222552540(Gbrowse)
Chromosome: chr02 Position: 22552540 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 85.21% | 14.79% |
| All Indica | 768 | 74.22% | 25.78% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 357 | 64.99% | 35.01% |
| Indica II | 207 | 78.74% | 21.26% |
| Indica Intermediate | 204 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222552540 | A->G | INTERGENIC | None |