Detailed information of SNP:
|
SNP ID:
sf0222568416(Gbrowse)
Chromosome: chr02 Position: 22568416 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 51.74% | 48.26% |
| All Indica | 791 | 85.97% | 14.03% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 371 | 81.94% | 18.06% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222568416 | G->A | INTERGENIC | None |