Detailed information of SNP:
|
SNP ID:
sf0222607081(Gbrowse)
Chromosome: chr02 Position: 22607081 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.18% | 49.82% |
| All Indica | 798 | 82.83% | 17.17% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222607081 | C->T | INTERGENIC | None |