Detailed information of SNP:
|
SNP ID:
sf0222609215(Gbrowse)
Chromosome: chr02 Position: 22609215 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 96.53% | 3.47% |
| All Indica | 791 | 94.44% | 5.56% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 208 | 81.73% | 18.27% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222609215 | C->A | LOC_Os02g37460(LOC_Os02g37460.1) | Non-Synonymous SNP |