Detailed information of SNP:
|
SNP ID:
sf0222617246(Gbrowse)
Chromosome: chr02 Position: 22617246 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 95.41% | 4.59% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222617246 | T->C | LOC_Os02g37480(LOC_Os02g37480.1) | UTR_3_PRIME |