Detailed information of SNP:
|
SNP ID:
sf0222619773(Gbrowse)
Chromosome: chr02 Position: 22619773 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.81% | 49.19% |
| All Indica | 796 | 84.05% | 15.95% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222619773 | G->A | INTERGENIC | None |