Detailed information of SNP:
|
SNP ID:
sf0222624498(Gbrowse)
Chromosome: chr02 Position: 22624498 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 94.50% | 5.50% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222624498 | C->T | INTERGENIC | None |