Detailed information of SNP:
|
SNP ID:
sf0222630707(Gbrowse)
Chromosome: chr02 Position: 22630707 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.86% | 17.14% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 496 | 65.52% | 34.48% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 80.84% | 19.16% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222630707 | G->A | LOC_Os02g37500(LOC_Os02g37500.1) | INTRON |