Detailed information of SNP:



SNP ID: sf0222631549(Gbrowse)

Chromosome: chr02

Position: 22631549
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 95.84% 4.16%
All Indica799 98.50% 1.50%
All Japonica497 100.00% 0.00%
Aus67 35.82% 64.18%
Indica I375 100.00% 0.00%
Indica II213 94.84% 5.16%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic13 92.31% 7.69%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222631549 C->T INTERGENIC None