Detailed information of SNP:
|
SNP ID:
sf0222642083(Gbrowse)
Chromosome: chr02 Position: 22642083 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 51.69% | 48.31% |
| All Indica | 796 | 85.55% | 14.45% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222642083 | C->A | INTERGENIC | None |