Detailed information of SNP:
|
SNP ID:
sf0222647540(Gbrowse)
Chromosome: chr02 Position: 22647540 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 95.62% | 4.38% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222647540 | C->A | INTERGENIC | None |