Detailed information of SNP:
|
SNP ID:
sf0222648493(Gbrowse)
Chromosome: chr02 Position: 22648493 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.31% | 45.69% |
| All Indica | 797 | 84.07% | 15.93% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 84.22% | 15.78% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222648493 | T->C | INTERGENIC | None |