Detailed information of SNP:
|
SNP ID:
sf0222650163(Gbrowse)
Chromosome: chr02 Position: 22650163 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.78% | 46.22% |
| All Indica | 798 | 83.46% | 16.54% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 83.69% | 16.31% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222650163 | A->G | LOC_Os02g37550(LOC_Os02g37550.1) | Non-Synonymous SNP |