Detailed information of SNP:
|
SNP ID:
sf0222657730(Gbrowse)
Chromosome: chr02 Position: 22657730 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 67.80% | 32.20% |
| All Indica | 798 | 88.35% | 11.65% |
| All Japonica | 493 | 31.64% | 68.36% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 85.56% | 14.44% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 334 | 37.43% | 62.57% |
| Tropical Japonica | 92 | 15.22% | 84.78% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222657730 | A->G | INTERGENIC | None |