Detailed information of SNP:
|
SNP ID:
sf0222657916(Gbrowse)
Chromosome: chr02 Position: 22657916 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.06% | 45.94% |
| All Indica | 798 | 83.96% | 16.04% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222657916 | T->C | INTERGENIC | None |