Detailed information of SNP:
|
SNP ID:
sf0222659169(Gbrowse)
Chromosome: chr02 Position: 22659169 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 69.63% | 30.37% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 35.01% | 64.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222659169 | A->G | INTERGENIC | None |