Detailed information of SNP:
|
SNP ID:
sf0222665896(Gbrowse)
Chromosome: chr02 Position: 22665896 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.21% | 49.79% |
| All Indica | 797 | 82.06% | 17.94% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222665896 | T->A | INTERGENIC | None |