Detailed information of SNP:



SNP ID: sf0222666046(Gbrowse)

Chromosome: chr02

Position: 22666046
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 51.62% 48.38%
All Indica799 80.10% 19.90%
All Japonica497 1.21% 98.79%
Aus67 94.03% 5.97%
Indica I375 80.53% 19.47%
Indica II213 83.57% 16.43%
Indica Intermediate211 75.83% 24.17%
Temperate Japonica335 0.30% 99.70%
Tropical Japonica94 5.32% 94.68%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 21.43% 78.57%
Intermediate41 48.78% 51.22%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222666046 T->C INTERGENIC None