Detailed information of SNP:
|
SNP ID:
sf0222668980(Gbrowse)
Chromosome: chr02 Position: 22668980 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 68.98% | 31.02% |
| All Indica | 795 | 88.05% | 11.95% |
| All Japonica | 497 | 34.00% | 66.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222668980 | T->C | INTERGENIC | None |