Detailed information of SNP:
|
SNP ID:
sf0222672084(Gbrowse)
Chromosome: chr02 Position: 22672084 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.93% | 31.07% |
| All Indica | 794 | 88.04% | 11.96% |
| All Japonica | 497 | 34.61% | 65.39% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 373 | 85.52% | 14.48% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 22.09% | 77.91% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222672084 | T->C | INTERGENIC | None |