Detailed information of SNP:
|
SNP ID:
sf0222673589(Gbrowse)
Chromosome: chr02 Position: 22673589 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.14% | 46.86% |
| All Indica | 799 | 82.85% | 17.15% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222673589 | A->G | INTERGENIC | None |